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April 2019
This project is maintained by UofABioinformaticsHub
If you are running a University administered machine, you will hopefully have pre-configured your machine. The following installations will only be able to be performed if you have Administration privileges on your computer. If you have not pre-configured your machine, we will provide you with an USB containing a live install of Ubuntu for you to use.
git
and is the best alternative for Windows.
There are some subtle differences between Mac and Linux versions, but most are cosmetic for these sessions.git bash
by going to the following site: https://git-for-windows.github.io/ and selecting the Git-2.xx.x-(32|64)-bit.exe
file as is appropriate for your computer.
If you’re unsure if you have a 32 or 64 bit computer, follow these instructionsC:\Program Files\Git
(the default). If you do install elsewhere please change any file paths below accordingly.nano
as the default editor instead of vim
.Although we may not use this much today, an excellent alternative editor for scripts on the Windows OS is Notepad++.
A key difference between Windows and Linux/OSX systems is the hidden characters used to denote end-of-line
(EOL).
Most editors such as Wordpad, MS Word etc will change these without you knowing and scripts will not be able to be run if edited using these programs.
Notepad++ does not do this and using this software will allow you to edit scripts conveniently without breaking them.
Notepad++ can be obtained from here