Course Homepage
September 2017
This project is maintained by UofABioinformaticsHub
To set up your own computer for today’s session, follow these instructions. Copying and pasting the given code may be the easiest way to make sure everything works.
Applications -> Utilities -> Terminal
.homebrew
installed, type the following to your terminal. If you do have homebrew
installed, please skip to the next step
/usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"
GNU sed
and wget
by entering the following commands in your terminal
brew install gnu-sed --default-names
brew install wget
sed
and wget
into your PATH
echo "export PATH=\${PATH}:/usr/local/Cellar/gnu-sed/4.4/bin:/usr/local/Cellar/wget/1.19.1_1/bin" >> ~/.bash_profile
After completing the above steps, close the terminal then open it again. To test if these installations have been successful enter the following:
sed --version
This should give you the version of GNU sed
.
If you see an error, the installation hasn’t worked, and you should call an instructor over.
If the first test was successful, enter the following
wget --version
Again, this should give you the correct version of wget
.
If you see an error, the installation hasn’t worked, and you should call an instructor over.