RAdelaide July 2016

This project is presented by UofABioinformaticsHub

RAdelaide, July 20-22 2016

This Course is presented by the University of Adelaide, Bioinformatics Hub

Before the Course

Please use the following instructions to ensure your computer is ready for the training sessions

Setup Instructions (Last updated on 18-Jul-2016)

Course Material

Day 1: Wednesday 20th July

Session 1 - Introduction to R and RStudio: Slides or Markdown
Session 1 - Importing Data Into R: Slides or Markdown
Session 2 - Data Cleaning and Tidying: Slides or Markdown
Session 2 - Data Manipulation: Slides or Markdown
Session 3 - Data Visualisation: Slides or Markdown
Session 3 - Making Professional Graphics: Slides or Markdown
Session 4 - Writing Reports Using RMarkdown: Slides or Markdown

Day 2: Thursday 21st July

Session 1 - R Data Types: Slides or Markdown
Session 2 - Writing Functions: Slides or Markdown
Session 3 - Getting More Out Of Functions: Slides or Markdown
Session 4 - Running RStudio on a Nectar VM: webpage or pdf

Day 3: Friday 22nd July

Session 1 - R In The Genomics Era: Slides or Markdown
Session 1 - Annotation Information: Slides or Markdown
Session 1 - Working With Strings: Slides or Markdown
Session 2 - TxDb Objects: Slides or Markdown
Session 2 - GRanges Objects: Slides or Markdown
Session 2 - Plotting Maps: Slides or Markdown
Session 3 - Generalised Linear Models: Slides or R Script
Session 4 - Mixed Models: Slides or R Script

Provisional Timetable

Time Wednesday Thursday Friday
9:00am
  • Introduction to R Studio
  • Data Importing
  • Understanding R Data Types
  • R in the Genomics Era
10:30am Morning Tea
11:00am
  • Cleaning, Tidying and Manipulating Data
  • Writing Functions in R
  • R in the Genomics Era
12:30pm Lunch
1:30pm
  • Data Visualisation
  • Making Professional Images
  • Getting More Out Of Functions
  • Running R In Parallel
  • Basic Statistical Modelling
3:00pm Coffee Break
3:30pm
  • Writing Reports Using R Markdown
  • Running R Studio In The Nectar Research Cloud
  • Mixed-Effects Models