Spring_Into_Bioinformatics
Spring Into Bioinformatics 2019
Presented by the Bioinformatics Hub,
University of Adelaide
Oct 2-4, 2019
9am - 5pm
Room 422, Horace Lamb Building
University of Adelaide
Computer Setup
- The instructions you’ll need to follow to connect to your VM are here
Housekeeping
Wi-Fi Access
UofA Staff / Students: Use your usual login
Others: Either eduroam or UofA-Guest
Password for UofA-Guest:
Food
- Food and drinks are allowed in the room. Please take any rubbish with you or use the bins provided
Day 1
| Session | Topic |
|---|---|
| 9:00 - 10:30 | 1. Introduction To RStudio |
| 2. Introduction To R Markdown | |
| 11:00 - 12:30 | 3. Importing Data |
| 4. Visualising Data | |
| 1:30 - 3:00 | 5. Manipulating Data |
| 6. Adding Annotations | |
| 3:30 - 5:00 | 7. Enrichment Analysis |
Day 2
| Session | Topic |
|---|---|
| 9:00 - 10:30 | 1. Introduction To Bash |
| 11:00 - 12:30 | 2. Working With Alignments |
| 1:30 - 3:00 | 3. From Alignments To Counts |
| 3:30 - 5:00 | 4. Differential Gene Expression |
Day 3
| Session | Topic |
|---|---|
| 9:00 - 10:30 | 1. Introduction To NGS |
| 11:00 - 12:30 | 2. FastQC of Raw Data and Adapter Removal |
| 1:30 - 3:00 | 3. Building a Genome Index |
| 3:30 - 5:00 | 4. Aligning Reads to a Reference |